phasing
Here are 42 public repositories matching this topic...
GWAS QC, PCA, haplotype phasing, genotype imputation
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May 23, 2024 - Python
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
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May 7, 2024 - Rust
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May 6, 2024 - Python
ClairS - a deep-learning method for long-read somatic small variant calling
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May 4, 2024 - Python
Segmented HAPlotype Estimation and Imputation Tool
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Apr 29, 2024 - C++
Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
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Apr 9, 2024 - Python
Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
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Apr 2, 2024 - Jupyter Notebook
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
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Feb 29, 2024 - Python
gwas workflow from raw intensity data to in-silico functional mapping
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Feb 5, 2024 - Nextflow
Scripts to automate the phasing with several tools
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Jan 28, 2024 - Python
Python library for simple and complex indels.
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Jan 22, 2024 - C
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
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Jan 19, 2024 - Python
Ploidy agnostic phasing pipeline and algorithm
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Jan 3, 2024 - Python
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
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Nov 9, 2023 - Shell
Autoencoders for genomic data compression, classification, imputation, phasing and simulation.
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Oct 2, 2023 - Python
haplotype estimation, custom panel creation, and genotype imputation
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Sep 11, 2023 - Nextflow
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Sep 7, 2023 - Rust
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