A pipeline to select the best K (number of clusters) for fastPHASE imputation and phasing.
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Updated
Mar 8, 2018 - R
A pipeline to select the best K (number of clusters) for fastPHASE imputation and phasing.
A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.
Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.
An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infe…
scripts associated with yam genome assembly
A python parser to simplify and build the VCF (Variant Call Format).
Easy, fast, configurable version of phasor. Perfect for students who what to start with analyzing Coherent X-ray Diffraction Data.
Microsatellite genotyping
Minor Variant Calling and Phasing Tools
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
a python program to stitch the ReadBack phased haplotypes in F1 hybrids.
An efficient genetic data imputation pipeline
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
A phasing and imputation pipeline for NGS data
Step-by-step guide to different types of phasing and testing their accuracy
Pipeline for genotype phasing using SHAPEIT4
psychedelic visual synthesizer color-organ style
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