Julia package for neural estimation
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Updated
Jun 7, 2024 - Julia
Julia package for neural estimation
Simulation-based inference toolkit
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
A Python library for amortized Bayesian workflows using generative neural networks.
python Parameter EStimation TOolbox
Workflow engine for exploration of simulation models using high throughput computing
CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.
Fast and automatic structural identifiability software for ODE systems
Material for standard text book model of batch cultivation where model is calibrated using time series data for substrate and cell concentration. Updated.
The Thomson scattering diagnostic offers a method by which to infer plasma parameters such as n_e, T_e. This codebase uses the form factor equations to estimate those plasma parameters by fitting to observed Thomson scattering spectra.
General-purpose library for fitting models to data with correlated Gaussian-distributed noise
a gradient-based optimisation routine for highly parameterised non-linear dynamical models
State estimation, smoothing and parameter estimation using Kalman and particle filters.
Toolbox for parameter estimation of the Standard Model of diffusion in white matter
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
Fast Bayesian optimization, quadrature, inference over arbitrary domain with GPU parallel acceleration
X-PSI: X-ray Pulse Simulation and Inference
Estimate Crop Models' parameters
Code for parameter estimation for my BSc thesis work @ University Fedeerico II of Naples
Advanced Multilanguage Interface to CVODES and IDAS
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