Pangenomics Workshop Overview
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Updated
Jun 8, 2024 - Python
Pangenomics Workshop Overview
AMR/VF LGT focused bacterial genomics analysis workflow
An analysis and visualization platform for 'omics data
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
This repo house the scripts for de-novo genome assembly, assembly polishing, assessing assembly quality of PacBio HiFi whole genome sequence data and downstream pangenomics analysis to identify some structural variants
generating hardware accelerators for pangenomic graph queries
Pangenome Analysis in Prokaryotes Lesson
Topological data analysis for Comparative Genomics
Introduction to Python: Pangenomics
Introduction to the Command Line for Pangenomics
Analysis of shared parts of a pangenome
Library to parse, edit and handle in memory GFA graphs
Scripts for Hill et al. (in review) 🌾
Optimal sequence-to-graph alignment with recombinations
bacterial metagenomes and pangenome graphs from both illumina and long reads
pangenome metagenomics normalizer for gene annotations specifically gene ontologies.
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
The lumpy skin disease virus (LSDV) pangenome variation graph (PVG)
Advancing the Indian Cattle Pangenome: Characterizing Non-Reference Sequences in Bos indicus
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