pacbio
Here are 106 public repositories matching this topic...
Neat AWS config, workflow, pipline
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May 10, 2017 - Jupyter Notebook
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
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Jun 20, 2017 - Shell
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
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Oct 18, 2017 - Shell
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Nov 17, 2017 - Shell
A gap filling tool for genomes that utilizes PacBio long reads
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Jan 12, 2018 - Python
Retrieving Polylox Barcodes from PacBio Reads (RPBPBR)
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Feb 13, 2018 - Perl
SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)
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Feb 19, 2018 - C
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
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May 29, 2018 - C++
Close assembly gaps using long-reads with focus on correctness.
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Aug 9, 2018 - D
preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.
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Sep 10, 2018 - C++
Bioinformatics software list
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Jan 15, 2019 - Perl
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Jan 28, 2019 - R
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
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Jul 15, 2019 - C
Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
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Oct 14, 2019 - C
Predict plasmids from uncorrected long read data
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Dec 5, 2019 - Python
A fast tool for hybrid genome assembly of long and short reads
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Apr 22, 2020 - C++
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