Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
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Updated
Jun 20, 2017 - Shell
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
Public repository of data and analyses from Dirks and Jackson (2020), "Community structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy", Applied and Environmental Microbiology 86 (19)
Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
Assembly of chloroplast genome using long-reads and short-reads for Genomics Course 2021 (MSc Bioinformatics for Computational Genomics)
Toolkit and pipeline for processing short- and long-read RNA sequencing data.
pacbio or oxford nanopore long reads repeat coverage estimation.
A small example to test DENTIST's workflow
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
NextITS pipeline documentation
pattern detection in R using the stringR package for the pacbio and the oxford nanopore reads
a conda yaml for the genomehifi-contiguity analysis.
A phase-aware pharmacogenomic diplotyper for PacBio datasets
A collection of softwares to handle and model PacBio kinetic signal data and predict epigenetics modifications.
Hormiphora californensis genome annotation and supplemental materials related to the genome assembly.
Elloreas, a genome assembler
Inter-sample analysis of SQANTI classifications
Inversion status and de novo assembly of Drosophila melanogaster
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