OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

A web application to find patients, build cohorts and visualize health records

Toolkit for evaluating and monitoring AI models in clinical settings

Unlocking the Power of Health Data With a Modern Data Lakehouse

OMOP <-> FHIR mapper

Former repo for Hutch

Carrot: Convenient And Reusable Rapid Omop Transformer.

An ETL pipeline to transform your EMP data to OMOP.

Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6

tool to facilitate the setup and ongoing maintenance of OHDSI & EHDEN tool deployments

ETL engine to transform openEHR into OMOP. Loads OMOCL configuration files.

The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR and the OMOP CDM

A software toolkit for the interconversion of standard data models for phenotypic data

SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM

During the pandemic countries in the African region used data systems they built on top of the WHO Integrated Disease Surveillance and Response (IDSR) framework to track COVID-19 and formulate public health responses. Our IDSR project wrangles these data systems into instances of a common data model and conducts network research on top of them.

Create a simulation patient population using Synthea and ETL it into the OMOP Common Data Model

Custom Airflow operators and hooks, that help to upload our raw hospital data to Google Cloud.

R package to parse datasets into SQLite-friendly tables