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Aug 29, 2017 - C
network-inference
Here are 52 public repositories matching this topic...
Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)
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Nov 19, 2020 - R
A visualization toolset for MERLIN Networks. Allows for direct user interaction.
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Mar 12, 2024 - R
REDUCE is an algorithm for optimal design of gene knock-out (KO) for the purpose of gene regulatory network (GRN) inference.
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Mar 8, 2018
Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine
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Oct 5, 2022 - R
Construction of functional network from fMRI tasked-based data
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Apr 25, 2022 - MATLAB
A network inference method based on a simple response logic with minimal presumptions
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Jul 8, 2021 - Python
Python wrapper of the PC++ skeleton function
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Jun 19, 2018 - C++
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Dec 22, 2017 - R
Containers for notebooks and data where REGAIN has been used.
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Dec 23, 2019 - Jupyter Notebook
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Jan 31, 2018 - Jupyter Notebook
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Jan 13, 2021
Code for Chasman et al, PLOS Comp Biol 2016.
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Jul 10, 2017 - GAMS
Learning relational models from networked data on the web
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Jul 23, 2023 - Jupyter Notebook
📊 📋 Bioconductor R package with Graphical Interface to handle multi-omic data by Classification, Enrichment and Network inference.
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Apr 5, 2022 - R
Identifiability and experimental design in perturbation studies
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Sep 25, 2020 - Python
FASTEN: the software to influence multiple diffusion networks using the first-hand sharing pattern.
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Jun 3, 2017 - C++
This package implements a benchmarking of several gene network inference algorithms from gene expression data
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May 17, 2020 - R
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