`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports
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Updated
Jun 6, 2024 - Rust
`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
Python library to deal with taxonomic IDs and lineages from the NCBI's Taxdump files
ClinVar Submission API Made Easy
Python Clinical Variant Tools This repository hosts Python scripts designed to streamline the retrieval of clinical variant information from authoritative sources such as ClinVar and DisGeNET. These tools facilitate efficient data extraction and analysis for researchers and professionals in the field of genetics and genomics.
Bot that toots when NCBI updates their taxonomy database
multiprocessed ncbi edirect
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
With Tkinter GUI. Provides autocomplete suggestions for organism names from a SQLite database, using Levenshtein distance for string matching.
Genome Metadata Visualizer is a series of scripts written to process and visualise genome metadata after it is pulled from NCBI using the dataset and dataformat command line tools.
This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.
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