The software package SiteGA for de novo motif search in ChIP-seq data
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Updated
Jun 7, 2024 - C++
The software package SiteGA for de novo motif search in ChIP-seq data
Gibby is a Python package designed to find the motif of a transcription factor de novo based on ChIP-seq data.
STUMPY is a powerful and scalable Python library for modern time series analysis
Motiflets
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
motif locator for plant resistance genes.
Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
Variational Auto Encoders for learning binding signatures of transcription factors
RNAelem is a tool for learning secondary structural motifs from a set of RNA sequences.
Time Series with Matrix Profile in Java
R package for the RNA Centric Annotation System (RCAS)
Structural Temporal Modeling to characterize temporal networks
A Python 3 library making time series data mining tasks, utilizing matrix profile algorithms, accessible to everyone.
A package-like tool that analyzes protein sequences, categorizes a protein of interest into one of two groups, predicts secondary structure based on dihedral angles/Ramachandran plots and Chou and Fasman's statistical propensity method, and does pattern search by Naive, KMP, and Bayer-Moore
Time-series analysis using the Matrix profile in Julia
A performant, powerful query framework to search for network motifs
Web page repository for Graphlet.AI
An exhaustive GPU algorithm written in C++ to reveal degenerate oligonucleotide motifs written in the 15-letter IUPAC code
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