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Apr 4, 2019
molecular-evolution
Here are 55 public repositories matching this topic...
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Sep 14, 2015 - TeX
A new model-selection criteria for phylogenetics to calculate the predictive log-likelihood score.
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Dec 14, 2022 - Python
R script for GenBank sequences names changing, filling-in missing molecular markers data and sequences concatenation
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Jul 11, 2023 - R
Companion repository to the Internalin P Listeria manuscript | HardyLab & JRaviLab
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Jul 6, 2022
A Maxima package to work with evolutionary dynamics and related topics.
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Jun 22, 2020 - Shell
*Monteagudo-Cascales E., *Gumerov V.M., Fernández M., Matilla M.A., Gavira J.A., Zhulin I.B., Krell T. (2024) Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria.
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Apr 29, 2024 - Python
Phylotranscriptomic analysis pipeline
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May 27, 2024 - Python
Supporting material for the "Molecular Evolution and Phylogeny" lecture | Feb 27, 2020
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Feb 27, 2020
Calculate conditional probability distributions of extant sequences given a phylogenetic tree, sequence alignment, and evolutionary model.
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Mar 7, 2023 - Python
Useful scripts I've written during my dissertation research.
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Jun 20, 2023 - R
*Cerna-Vargas J-P., *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120
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Mar 24, 2023
Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
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Aug 3, 2022 - R
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Dec 26, 2021 - JavaScript
A repository containing all the file projects that I have for the Bioinformatics 4 (COMP 4312c) course.
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Jan 11, 2023
Janani Ravi's Research Group
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Jan 5, 2024 - HTML
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Jan 4, 2024
SpeciesTopoTestR: Likelihood-based hypothesis tests of species topologies in R
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Aug 25, 2022 - R
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