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Apr 4, 2019
molecular-evolution
Here are 55 public repositories matching this topic...
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Sep 14, 2015 - TeX
A new model-selection criteria for phylogenetics to calculate the predictive log-likelihood score.
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Dec 14, 2022 - Python
Simulate predictive datasets from MrBayes' output
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Jul 11, 2019 - Python
A codeml (PAML package) wrapper to make life easier. Dummy input unaligned multi-species fasta file (a single gene), and output codeml result.
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May 29, 2023 - Python
R script for GenBank sequences names changing, filling-in missing molecular markers data and sequences concatenation
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Jul 11, 2023 - R
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Jan 4, 2024
A curated list of awesome Molecular Modeling And Drug Discovery 🔥
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Jul 21, 2022
Companion repository to the Internalin P Listeria manuscript | HardyLab & JRaviLab
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Jul 6, 2022
A Maxima package to work with evolutionary dynamics and related topics.
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Jun 22, 2020 - Shell
Supporting material for the "Molecular Evolution and Phylogeny" lecture | Feb 27, 2020
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Feb 27, 2020
Calculate conditional probability distributions of extant sequences given a phylogenetic tree, sequence alignment, and evolutionary model.
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Mar 7, 2023 - Python
Homepage of Dr Stephen P. Moss, Computational Scientist
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Sep 19, 2023 - HTML
*Monteagudo-Cascales E., *Gumerov V.M., Fernández M., Matilla M.A., Gavira J.A., Zhulin I.B., Krell T. (2024) Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria.
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Apr 29, 2024 - Python
An R package to identify and classify duplicated genes from whole-genome protein sequence data
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Mar 20, 2024 - R
Useful scripts I've written during my dissertation research.
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Jun 20, 2023 - R
*Cerna-Vargas J-P., *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120
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Mar 24, 2023
Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab
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Aug 3, 2022 - R
A comparative annotation toolkit (CAT) pipeline for 304 fly genomes.
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Apr 29, 2024 - Shell
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