MDAnalysis is a Python library to analyze molecular dynamics simulations.
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Updated
May 31, 2024 - Python
Molecular dynamics allows the atoms and molecules to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system.
MDAnalysis is a Python library to analyze molecular dynamics simulations.
Repository of the gromacstutorials webpage
Open source library to work with molecular systems
LAMMPS tutorials for both beginners and advanced users
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mirrored from https://gitlab.com/ccp5/dl-poly/
This repo contains python scripts used in Mack et al. 2022 (doi.org/10.1016/j.jmb.2022.167482). This includes MD simulations code and analysis scripts. The usage of these Python scripts is further explained in the enclosed README.pdf
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Real time molecular dynamics in the browser using LAMMPS
The Website of the Ramiréz Lab
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Package to perform minimum-distance distribution analyses of complex solute-solvent interactions