Classification of EHR data with BERT
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Updated
Sep 11, 2023 - Python
Classification of EHR data with BERT
A program to create RDF and RDF* knowledge graphs from the clinical database MIMIC-III, where a hospital layout has been created and patients move within the hospital.
Companion code repository to Marcou et al. 2024, Creating a computer assisted ICD coding system: Performance metric choice and use of the ICD hierarchy
Provenience of discharge summaries Pythonic access (BioNLP paper)
Development of a disease prediction model on the MIMIC III heathcare dataset
PatientINF embedding models - with forum extraction and model building scripts.
MIMIC-III database docker container
Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.
Provenience of discharge summaries
Code and Datasets for the paper "Deconfounding actor-critic network with policy adaptation for dynamic treatment regimes", published on KDD 2022.
eICU workshop presented at Hack Aotearoa
The influence of specific types of antidepressants on ICU mortality
Used MIMIC III database, an Open Data Kit (ODK), and hospital admissions data from the UK.gov HES data. Various investigations as per hospital requirements have been done, including ICU and hospital LOS investigations for patients with cardiac devices.
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