Image-processing software for cryo-electron microscopy
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Updated
May 8, 2024 - C++
Image-processing software for cryo-electron microscopy
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Tools for computational pathology
PyTorch Connectomics: segmentation toolbox for EM connectomics
Scientific analysis of nanoscale materials imaging data
cuCIM - RAPIDS GPU-accelerated image processing library
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
A collection of tools for painting super-resolution images
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
Read and write Neuroglancer datasets programmatically.
Automated 3D cell detection in very large images
Deep and Machine Learning for Microscopy
TF Implementation of Multiple Instance Learning FCN.
Python package for processing image-based profiling data
Axon/Myelin segmentation using Deep Learning
Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.
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