microbiome
Here are 376 public repositories matching this topic...
CUSO Microbiome analysis workshop 2020
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Jul 13, 2021 - R
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Mar 12, 2021 - HTML
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
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Jan 29, 2023 - R
R pipeline to build models specializing on zero-inflated microbiome data
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Dec 6, 2022 - HTML
User documentation for the VIBES - VagInal Bacterial subtyping using machine learning for Enhanced classification of bacterial vaginosiS - package
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Dec 9, 2023
A python implementation of the decontam R package for ASV filtering.
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Sep 5, 2023 - Python
BioFlowML is a machine-learning toolbox implementing workflows for generating classification models and identification of biomarkers using microbiome data or clinical metadata.
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Jun 4, 2024 - Python
A custom bioinformatic workflow for UPDX (Universal Parasite Detection assay) sequences analysis.
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Mar 25, 2022 - R
Prediction of colorectal cancer (CRC) phenotype based on Microbiome Metagenomics
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Jul 5, 2022 - Jupyter Notebook
An analysis of cortisol levels and gut microbiome composition in primates (Gorilla) housed in U.S. zoos using the BugSeq-er pipeline.
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Aug 10, 2023 - R
Flask RESTFUL back-end for the BU microbiome-initiative web application
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Feb 9, 2018 - Python
DGRPy is a python package for DGRP microbiome data analysis
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Jun 28, 2021 - Python
Pipelines to run select BioBakery tools within the CGAT pipelines framework.
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Jun 19, 2019 - Python
Tools to handle metagenomic data manipulation
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Jan 9, 2022 - Python
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Aug 22, 2020 - CSS
The archive for data, scripts, and outputs for the paper "Exposure to antibacterial chemicals is associated with altered composition of oral bacteria; the RHINESSA study, Bergen, Norway".
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Sep 28, 2021 - HTML
Scripts for a manuscript titled "Subsurface Microbial Communities Reflect Regional-Scale Groundwater Hydraulic Connectivity" (submitted)
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Jul 10, 2022 - R
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