microbiome
Here are 376 public repositories matching this topic...
CUSO Microbiome analysis workshop 2020
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Jul 13, 2021 - R
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Mar 12, 2021 - HTML
Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.
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Feb 26, 2022 - HTML
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
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Jan 29, 2023 - R
R pipeline to build models specializing on zero-inflated microbiome data
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Dec 6, 2022 - HTML
User documentation for the VIBES - VagInal Bacterial subtyping using machine learning for Enhanced classification of bacterial vaginosiS - package
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Dec 9, 2023
A python implementation of the decontam R package for ASV filtering.
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Sep 5, 2023 - Python
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Jul 15, 2023 - R
BioFlowML is a machine-learning toolbox implementing workflows for generating classification models and identification of biomarkers using microbiome data or clinical metadata.
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Jun 4, 2024 - Python
Tutorials on microbiome analysis using the Quantitative Insights Into Microbial Ecology (QIIME) platform
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Jul 29, 2017 - Shell
Microbiome Study of Lupus Patients
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May 3, 2018 - HTML
Visualizing taxa of different amplicon primer sets
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Mar 28, 2019 - Jupyter Notebook
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
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Sep 6, 2021 - Jupyter Notebook
Data Supplement: Microbiota-independent attenuation and microbiota-dependent promotion of type 1 diabetes by diet
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Nov 17, 2022 - MATLAB
A snakemake pipeline for amplicon (16S, 18S, ITS) sequence analysis using Usearch.
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Jul 25, 2023 - Python
VIBES - VagInal Bacterial subtyping using machine learning for Enhanced classification of bacterial vaginosiS
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Dec 8, 2023 - R
Prediction/source tracking of metagenomic samples source using machine learning
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Apr 15, 2020 - Python
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