Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
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Updated
May 26, 2016 - Go
Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
Code supporting Beitel et al. (2014) regarding strain- and plasmid-level metagenome deconvolution using high-throughput chromosome conformation capture.
Import and process results from a metagenomics output e.g. metaphlan2
Merge Kaiju, Kraken, and CLARK-S classifications of metagenomic reads
metagenomics visualization library
Visualize metagenomes in a web browser
A C and Python implementation of latent strain analysis for eigengenome partitioning.
Repository for BusyBee Web - Web-based deconvolution of metagenomic data by bootstrapped supervised binning
Client Serive of ARGpore pipeline for the analysis of antibiotic resistance in nanopore reads
recogniZing gEnome seqUences in metagenomic aSSemblies
Continuation analysis tools from pass, a gene centric assembly tool but written in python
Hierarchical scaffold/assembly graph web visualization tool. As of August 9, 2017, the official repository for this has moved to MarBL! Use that repository instead :)
Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.
🔍 in silico plasmid extraction
Statistical and Computational methods for Microbiome Studies.
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