NanoASV official repo
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Updated
Jun 7, 2024 - Shell
NanoASV official repo
Metabarcoding Joining Obitools3 & Linkage Networks In R
Versatile open-source tool for microbiome analysis
This repository contains all project files, including scripts, results, and articles. It was developed for the UC project included in the bioinformatics master's program for 2023-2024.
A python package to query different databases of boldsystems.org
Accurate sample inference from amplicon data with single nucleotide resolution
A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio
The purpose of this repository is the metagenomic analysis of FastQ files
A robust and fast clustering method for amplicon-based studies
Former version of METAPIPE
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Environmental DNA metabarcoding taxonomic identification
Pipeline for building topologically-constrained phylogenies from DNA barcode data
PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines
Qiime2 based pipeline designed to facilitate and standardise ecological studies by metabarcoding using Illumina Miseq data
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
R functions and workflow for submitting amplicon sequence data to the ENA.
Shiny app that creates files used by the OBITools to demultiplex metabarcoding sequences
A DADA2 pipeline using rbcl markers libraries and a Phyloseq script to output graphical results.
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