MDAnalysis is a Python library to analyze molecular dynamics simulations.
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Updated
May 22, 2024 - Python
MDAnalysis is a Python library to analyze molecular dynamics simulations.
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
Interaction Fingerprints for protein-ligand complexes and more
a python package for the interfacial analysis of molecular simulations
Parallel algorithms for MDAnalysis
Fast and accurate aerodynamic modeling using general numerical lifting-line theory.
Fork of library used in reading xtc files from GROMACS simulations
pKa estimates for proteins using an ensemble approach
Notebooks for interactive use on https://mybinder.org/
Command line interface for MDAnalysis
a logistics and persistence engine for the analysis of molecular dynamics trajectories
MDAnalysis tool to calculate membrane curvature.
SAPT energy calculator built using MDAnalysis and Psi4
Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.
Access to data for workshops and extended tests of MDAnalysis.
Benchmarking MDAnalysis with Dask (and MPI). Supplementary Information for SciPy 2017 paper.
Analysis of molecular dynamics trajectories or conformational ensembles in terms of spin-label distances as probed in double electron-electron resonance (DEER) experiments.
A package for molecular dynamics analysis and parallel tempering in GROMACS
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