Workflow for generating regular LC-MS data from the ones acquired in MRM mode
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Updated
Apr 1, 2017
Workflow for generating regular LC-MS data from the ones acquired in MRM mode
Getting some basic info about Thermo RAW files and MS2 scans
Calculate mass interference based on the composition of a sample and a target.
A software part of the QuiXoT software package used to analyse protein quantifications performed in the MS1-spectra (such as 18O/16O or SILAC).
R implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).
Molecular weight calculator for windows 10
Mass spectral libraries search tool (MSL-ST), used to enhance organic compounds' identification
Integrated LC-MS/MS-based de novo sequencing of antibody chains in complex mixtures
Companion code for the publication: Inglese, P., Huang, H., Wu, V., Lewis, M.R. and Takats, Z., 2021. Mass recalibration for desorption electrospray ionization mass spectrometry imaging using endogenous reference ions. biorXiv
R package for annotation of glycans in MS1 and MS2 data
Reproducibility repo for Shashikadze et al. "Structural and proteomic repercussions of growth hormone receptor deficiency on the pituitary gland – lessons from a translational pig model".
Mass spectrometry Perseus Data analysis
Extensions to use the cross-linking tool Scout with other software.
🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data
This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/
Pipeline and shiny app for the downstreaming analysis of quantitative proteomic data
MASSIVEChem is a pip-installable package centred around mass spectrometry
C# classes that can be used to interface with the ProteoWizard libraries
🍎 Web-based Application for Exploratory and Statistical Analysis of Mass Spectrometry Spectral Counts Data
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