Fast and accurate de novo assembler for long reads
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Updated
May 10, 2024 - C
Fast and accurate de novo assembler for long reads
PEPPER-Margin-DeepVariant
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
Long read production pipelines
Reference-guided transcript discovery and quantification for long read RNA-Seq data
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
⛓ Long Interval Nucleotide K-mer Scaffolder
Long-reads Gap-free Chromosome-scale Assembler
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.o…
A versatile compressor of third generation sequencing reads.
Predict plasmids from uncorrected long read data
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
A fast tool for hybrid genome assembly of long and short reads
Yet Another Chimeric Read Detector
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