long-read
Here are 23 public repositories matching this topic...
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
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Mar 18, 2024 - C++
Toolkit for calling structural variants using short or long reads
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Apr 26, 2024 - Cython
A Python library to visualize and analyze long-read transcriptomes
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Mar 14, 2024 - Jupyter Notebook
BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
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May 16, 2022 - C++
Minor Variant Calling and Phasing Tools
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Jan 13, 2022
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
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Jul 15, 2019 - C
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
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Oct 19, 2023 - Python
Analyse RNA feature distributions.
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Apr 29, 2024 - Jupyter Notebook
preqclr is a software tool that reports on quality for long read sequencing data without the use of a reference genome.
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Sep 10, 2018 - C++
Merge transcriptome read-to-genome alignments into non-redundant transcript models
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May 23, 2024 - Perl
MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing
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Mar 1, 2023 - Shell
Performs archiving and transfer of Nanopore sequencing data
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May 5, 2024 - Python
tool for long read transcriptome assembly
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Aug 24, 2023 - Jupyter Notebook
Fast and space-efficient taxonomic classification of long reads
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Mar 22, 2024 - C++
SIMulator for Long read transcriptome Analysis with RNA DecaY model
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Aug 10, 2020 - Python
Analyses of Penter, Borji & Nagler et al., 2023
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Nov 1, 2023 - R
Suite of tools for use in genome assembly and consensus. Work in progress.
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Mar 22, 2021 - Go
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