kmer
Here are 70 public repositories matching this topic...
Quickly search, compare, and analyze genomic and metagenomic data sets.
-
Updated
May 17, 2024 - Python
βHΞDI (Biomarker-based Heuristic Engine for Dengue Identification) is a computational tool designed for the identification of Dengue virus serotypes in wastewater next-generation sequencing data.
-
Updated
Apr 30, 2024 - Go
Fast and space-efficient taxonomic classification of long reads
-
Updated
Mar 22, 2024 - C++
Inference of ploidy and heterozygosity structure using whole genome sequencing data
-
Updated
Mar 15, 2024 - R
modular k-mer count matrix and Bloom filter construction for large read collections
-
Updated
Mar 11, 2024 - C++
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
-
Updated
Mar 9, 2024 - Python
SuperSampler, an efficient scaled size sketching and sketch comparison tool
-
Updated
Nov 13, 2023 - C++
a versatile toolkit for k-mers with taxonomic information
-
Updated
Nov 11, 2023 - Go
counts k-mers, written in rust
-
Updated
Sep 25, 2023 - Rust
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
-
Updated
Sep 22, 2023 - Go
instructions, python and R code for generating lava lamp plots of kmer coverage
-
Updated
Aug 8, 2023 - Python
Convert python string to hashed kmers and back again
-
Updated
Jul 21, 2023 - Cython
A kmer-based homology searching tool
-
Updated
Apr 24, 2023 - Julia
K-mer counting algorithms and count-data utilities for the BioJulia framework
-
Updated
Apr 23, 2023 - Julia
Context aware Move To Front Transform based compressor
-
Updated
Feb 27, 2023 - C++
Decompose a k-mer profile into several peaks each representing a copy number.
-
Updated
Feb 17, 2023 - Jupyter Notebook
Improve this page
Add a description, image, and links to the kmer topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the kmer topic, visit your repo's landing page and select "manage topics."