MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
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Updated
Nov 30, 2022 - Python
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
k-mer similarity analysis pipeline
K-mer counting algorithms and count-data utilities for the BioJulia framework
Kmer Research in Python and R
fast and comprehensive k-mer counting package
Very large scale k-mer counting and analysis on Apache Spark.
MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
Generate K-mer spectra to observe modalities of distributions
A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage in Parallel
Count canonical kmers with Malte Skarupke's bytell_hash_map hash table
Count canonical kmers with STL unordered_map
Count canonical kmers with Boost C++ `boost::unordered_map` hash table
Count canonical kmers with Abseil C++ `absl::flat_hash_map`
a ruby function for kmer iterations and kmer graph preparation. estimates the kmers and gives occurrences as tab delimited
Count canonical kmers with Google sparse_hash_map
A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
This is our implementation for D2 distance algorithm for k-mers.
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
Counts k-kmers and sorts top "k" kmer by occurrence.
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