GWAS QC, PCA, haplotype phasing, genotype imputation
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Updated
Jun 10, 2024 - Python
GWAS QC, PCA, haplotype phasing, genotype imputation
Genetic Medicine of African Populations
MOMENT: A Family of Open Time-series Foundation Models
RADseq Data Exploration, Manipulation and Visualization using R
Awesome Deep Learning for Time-Series Imputation, including a must-read paper list about applying neural networks to impute incomplete time series containing NaN missing values/data
PyGrinder grinds data beans into the incomplete by introducing missing values with different missing patterns.
A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputation, classification, clustering, forecasting, & anomaly detection on incomplete industrial (irregularly-sampled) multivariate TS with NaN missing values
Time Series Data Beans: a Python toolbox loads 170 public time-series datasets for machine learning/deep learning with a single line of code.
Multivariate Imputation by Chained Equations
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
Nearest neighbor-based imputation on multivariate data
Using ML to predict house price
Beta Machine Learning Toolkit
a package for missing data handling via multiple imputation by chained equations in Julia. It is heavily based on the R package {mice} by Stef van Buuren, Karin Groothuis-Oudshoorn and collaborators.
Simple Transparent End-To-End Automated Machine Learning Pipeline for Supervised Learning in Tabular Binary Classification Data
The tutorials for PyPOTS.
(Python, R, C/C++) Isolation Forest and variations such as SCiForest and EIF, with some additions (outlier detection + similarity + NA imputation)
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