Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
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Updated
Feb 21, 2024 - Python
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
QuPath - Bioimage analysis & digital pathology
Read and write TIFF files
Collection of mathematical morphology methods and plugins for ImageJ
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
sciview is a tool for visualization and interaction with ND image and mesh data
The ImageJ framework for quantification of neuronal anatomy
ImageJ macros and scripts written at the imaging facility MRI
Plugins for bone image analysis
Microscope control and image acquisition integrated with ImageJ.
An R Package for general purpose TIFF file I/O which plays nice with ImageJ
Tiny Image in Javascript - Edge Detection Algorithms
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
Image processing software for textbooks by W. Burger & M. Burge
Analysis of cell migration in Igor Pro
ImageJ, Python, and IDL viewers for areaDetector detectors and cameras
Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.