ImageJ macros and scripts written at the imaging facility MRI

an ImageJ toolset for EM image analysis

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.

A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions.

My awkward scripts for making image processing easier.

SMA is an ImageJ macro to automate the analysis of muscle architecture from B-mode ultrasound images.

A collection of random ImageJ macros I use at the lab

ImageJ functions and macros for working with thermal image files

ImageJ macro for morphological analysis

Collection of macros for image processing in Fiji/ImageJ

Immunolocalization of oxylipin receptors proteins in a model cnidarian-dinoflagellate symbiosis

ImageJ macros used in our 2021 paper on lysosomal restoration in parkinsonian mice

Stereological macros for ImageJ

ImageJ macros to analyse microglial cells in live or fixed tissue (Work-in-progress)

Package of ImageJ macros for quantification of cardiac histology.

🧠️🖥️2️⃣️0️⃣️0️⃣️1️⃣️💾️📜️ The sourceCode:ImageJ-Macro category for AI2001, containing ImageJ-Macro programming language datasets

ImageJ scripts for: (a) batch opening confocal files with two channels and merging them and (b) for a batch of confocal images with two channels, identifying nuclei as ROIs using one channel and quantifying the mean pixel intensity of each ROI using the other channel, and outputting results in Excel. Requirements and assumptions are in comments.

Automatically count cells in microscopy images with optimized parameter settings in ImageJ - [IJM]