Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
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Updated
Mar 15, 2020 - Python
Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
Copy Number Variant Analyzer for Illumina Dragen files. Work in Progress...
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
Create fastq symlinks for selected samples in sequencer output directories based on several criteria
📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.
A Github action for building Snapcraft projects
Group B Strep pipelines for large dataset gene analysis from Illumina sequencing.
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
RNA-Seq Pipeline for processing paired-end FASTQ transcripts generated from Illumina sequencing. The pipeline trims adapter sequences, aligns transcripts to a specified region of interest on the reference genome, and facilitates downstream analysis.
Parse Illumina InterOp folder
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
genome assembler for cleaning, mapping and assembling genomes.
Workflow and R scripts for Giongo et al. (2024)
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
code getter for illumina, pacbio, oxford long reads alignments.
Generate a .CSV manifest file for importing multiple samples in the Illumina MiSeq machine
A modernized ART for Illumina read simulation.
Discover VNTR-associated DELs that are hard to find using Illumina reads
Add a description, image, and links to the illumina-sequencing topic page so that developers can more easily learn about it.
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