Another Gtf/Gff Analysis Toolkit
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Updated
Jun 6, 2024 - Perl
Another Gtf/Gff Analysis Toolkit
A Rust library and CLI tool to handle genomic transcripts
Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.
A high-performance BED-to-GTF converter written in Rust
Fastest GTF/GFF-to-BED converter chilling around
A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.
This project consists of a Python script designed to convert coding sequences found in a GTF (Gene Transfer Format) file to protein sequences in the FASTA format. The code was developed as part of a university project for genomic sequence analysis.
Go / Golang Bioinformatics Library
GTF/GFF per gene non-overlapping exon length calculator
An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.
Extract Sequence from Genome According to Annotation File
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A small library to work with ensembl and other annotations in python
factR: Functional Annotation of Custom-assembled Transcripts in R
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