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Sep 18, 2018 - Scala
gtf
Here are 47 public repositories matching this topic...
A Python script to filter and extract information from GTF files based on chromosome names, designed to be easily accessible for biologists without extensive programming experience.
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Jun 7, 2023 - Python
An R package allowing flexible base trimming and complete Fastq analysis on Windows System
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Apr 16, 2021 - R
Exon BED Generator: A script to download, process, and generate a BED file with exon coordinates for Homo sapiens from a GTF file
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Jun 9, 2023 - Shell
GTF/GFF per gene non-overlapping exon length calculator
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Jan 2, 2024 - Rust
Gexplora - user-interface to analyse genomic elements along chromosomes
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Nov 15, 2020 - Python
Fastest GTF/GFF-to-BED converter chilling around
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Mar 27, 2024 - Rust
An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.
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Dec 2, 2023
This project consists of a Python script designed to convert coding sequences found in a GTF (Gene Transfer Format) file to protein sequences in the FASTA format. The code was developed as part of a university project for genomic sequence analysis.
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Feb 27, 2024 - Jupyter Notebook
A small library to work with ensembl and other annotations in python
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Sep 6, 2023 - Python
R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies
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Jul 17, 2017 - R
Custom python scripts useful for working with genome assemblies and annotations
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Jun 9, 2022 - Python
factR: Functional Annotation of Custom-assembled Transcripts in R
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Aug 2, 2023 - R
Gene Info Extractor: A Python script to extract gene information and annotations from CSV data
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Jun 9, 2023 - Python
A Rust library and CLI tool to handle genomic transcripts
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May 22, 2024 - Rust
Bioinformatics
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Nov 1, 2022 - Python
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