gsea
Here are 59 public repositories matching this topic...
R Markdown script to perform bioinformatic analysis on RNA-seq raw count matrices, including DE-testing via DESeq2 and gene set enrichment analysis (GSEA).
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May 22, 2024 - R
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
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May 24, 2024 - Nextflow
Brings bulk and pseudobulk transcriptomics to the tidyverse
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May 16, 2024 - R
📊 A universal enrichment tool for interpreting omics data
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May 15, 2024 - R
The official command-line program for gene-set-enrichment analysis (GSEA) 🏔️
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May 10, 2024 - Julia
Gene Set Enrichment Analysis in Python
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May 8, 2024 - Python
Gene Set Clustering based on Functional annotation
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May 3, 2024 - Perl
Function Enrichment analysis and Network construction
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Apr 29, 2024 - R
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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Feb 26, 2024 - R
Molecular Signatures Database (MSigDB) in a data frame
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Apr 1, 2024 - HTML
condense GSEA terms
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Jan 22, 2024 - R
GSEA plots in ggplot2
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Jan 21, 2024 - R
An integrated genomic and immunogenomic web-based platform for gene set cancer research
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Mar 27, 2024 - TypeScript
Main projects during my current position in Petr Baranov Lab | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
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Dec 8, 2023 - Jupyter Notebook
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
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Dec 6, 2023 - R
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
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Dec 5, 2023 - R
Integrated Differential Expression and Annotation
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Oct 18, 2023 - HTML
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