Another Gtf/Gff Analysis Toolkit
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Updated
Jun 6, 2024 - Perl
Another Gtf/Gff Analysis Toolkit
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.
A genome visualization python package for comparative genomics
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
RNAseq pipeline for alternative splicing junctions
Python programs for processing GFF3 files
Fastest GTF/GFF-to-BED converter chilling around
💻 Interconverting FASTA, GFF, and CSV.
GTF/GFF per gene non-overlapping exon length calculator
convert various features into a GFF-like file for use in genome browsers
Same species annotation lift over pipeline.
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
Efficiently keep track of changes to genomes
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