gff
Here are 45 public repositories matching this topic...
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
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May 23, 2024 - Python
Modify the gff export from Apollo, changing Name to ID.
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Feb 20, 2018 - Python
home-made scripts to manipulate sequence annotation file formats (gff / vcf / genbank)
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Jan 25, 2018 - Python
GTF parser for Java Dataframes
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Feb 5, 2024 - Java
Use Biopython to extract functional gene annotations from a GFF file and output them as a tab-delimited text file.
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Aug 15, 2020 - Python
💻 Interconverting FASTA, GFF, and CSV.
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Mar 19, 2024 - Python
Semantically Interoperable Genome Annotations
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Sep 3, 2019 - Python
A pipeline for reporting information on G-quadruplexes relative to coding regions and non-aligned regions.
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Aug 11, 2017 - Python
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.
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May 31, 2024 - Python
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Jul 13, 2017 - Python
Tools for importing GFF files to a Neo4J graph database
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Nov 10, 2017 - Scala
Predicting Transcription Factor Binding Sites from ENCODE data using Machine Learning
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Jul 7, 2017 - Python
GTF/GFF per gene non-overlapping exon length calculator
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Jan 2, 2024 - Rust
Genome parser and visualisation
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Oct 4, 2022 - Java
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Feb 27, 2019 - Shell
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