Python library to facilitate genome assembly, annotation, and comparative genomics
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Updated
May 20, 2024 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
Nextflow pipeline to assemble genomes from nanopore reads.
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
gawk and awk combined functions for working with pacbiohifi aligned data.
ruby function to generate dna sequence barcodes for sequencing labeling.
pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
a genome reference estimation based on the peak size calibration coming from the flow cytometry
genome annotation analyzer for the microbiome analysis
genotype prepare for sequencing paltform.
ease of access gff files from tair for reading tair ids.
A collection of publications on comparison of high-throughput sequencing technologies.
De novo assembly of the red legged patridge (Alectoris rufa) genome
A Python script that align SARS-CoV-2 genomes identifying and reporting pointwise variations.
Bioinformatics on GCP, AWS or Azure
Asynchronous Distributed Actor-based Approach to Jaccard Similarity for Genome Comparisons
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
Allele-specific copy number estimation with whole genome sequencing
UpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data, written entirely in Rust
Automated Tool for Global Screening Array analysis
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