Python library to facilitate genome assembly, annotation, and comparative genomics
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Updated
Jun 6, 2024 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
Viral genomics analysis pipelines
DNA sequencing analysis notes from Ming Tang
KubeGene - A turn-key Genome Sequencing workflow management framework
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Bioinformatics on GCP, AWS or Azure
Pan-genomic sequence analysis
Allele-specific copy number estimation with whole genome sequencing
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
A modern genomics framework for julia
TREDPARSE: HLI Short Tandem Repeat (STR) caller
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.
A collection of publications on comparison of high-throughput sequencing technologies.
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
map and call next generation genomic sequencing
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