pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
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Updated
May 2, 2024 - Shell
pacbiohifi sequencing genomes analysis using the verkko, hifiasm and the genomeasm4pg.
Python program that reports nucleotide and dinucleotide frequencies of a genome
Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang
genotype prepare for sequencing paltform.
A crash course in scATAC-seq data processing
Automated Tool for Global Screening Array analysis
This project is based on starting Bioinformatics as a life science student. Initializing a career as a Genetic Data Scientist and Bioinformatician.
A Python script that align SARS-CoV-2 genomes identifying and reporting pointwise variations.
a genome reference estimation based on the peak size calibration coming from the flow cytometry
[FCCM 2019] Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: A Race Between FPGA and GPU
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data, written entirely in Rust
A repository containing all the file projects that I have for the Bioinformatics 2 (COMP 4312a) course.
UpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023
ease of access gff files from tair for reading tair ids.
A high-fidelity prototype of the genomic medicine assistant web application
Python decoder for the HiC genome contact format
Phenotype-Gene Association Test for Case-Control Study using NGS-Sequencing Data
Asynchronous Distributed Actor-based Approach to Jaccard Similarity for Genome Comparisons
gawk and awk combined functions for working with pacbiohifi aligned data.
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