Genome browser and variant annotation
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Updated
Jun 4, 2024 - C++
Genome browser and variant annotation
cascading style sheets for the genome analysis, javascript and pacbiohifi
CGView.js creates interactive circular and linear genome maps.
WashU Epigenome Browser
Ultrafast Sample Placement on Existing Trees
a ruby gem for protein alignments. index the protein alignments, extract the regions of interest, extract the locus, extract the alignments
Modular Multi-scale Integrated Genome Graph Browser
A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
A python package for showing JBrowse views
A collaborative notebook for genes and genomes
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A JBrowse plugin for viewing GDC Data
A JBrowse plugin for viewing ICGC Data
Specifications and implementation of the TrackHub registry
The Advanced Genome Browser
Add a description, image, and links to the genome-browser topic page so that developers can more easily learn about it.
To associate your repository with the genome-browser topic, visit your repo's landing page and select "manage topics."