Programming Life, contextproject 2015.
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Updated
Jun 21, 2015 - Java
Programming Life, contextproject 2015.
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
AWS Bucket (S3) to securely host files for genome web browsing
A web app for viewing plasmid maps & genomes, and simulating PCR and Gibson assembly
A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides
A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Galaxy pipeline for the Mint
a ruby gem for protein alignments. index the protein alignments, extract the regions of interest, extract the locus, extract the alignments
Desktop-based genome browser.
Inter-sample analysis of SQANTI classifications
Reduce BAM file size by removing tags and quality information (>50 %) and/or downsampling.
cascading style sheets for the genome analysis, javascript and pacbiohifi
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
This repo contains materials for the Genome Browsers course, taught as part of ACE 2021.
An application for browsing and running statistical analyses on genome FASTA files.
Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.
An AngularJS (1.x) directive, wrapping the Genoverse genome browser.
The Advanced Genome Browser
Add a description, image, and links to the genome-browser topic page so that developers can more easily learn about it.
To associate your repository with the genome-browser topic, visit your repo's landing page and select "manage topics."