GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
-
Updated
Jun 1, 2024 - Visual Basic .NET
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
Earl Grey: A fully automated TE curation and annotation pipeline
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
Pipeline for performing routine genome assembly
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
This is a template for all assembly projects. Please read the instructions below on how to use it.
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Scripts for Hill et al. (in review) 🌾
Read Assembly and Annotation Pipeline Tool
The genome of the contractile demosponge Tethya wilhelma
from protein alignments to deep learning preparatory.
a ruby gem for protein alignments. index the protein alignments, extract the regions of interest, extract the locus, extract the alignments
Pipeline for the identification of (coding) gene structures in draft genomes.
Eukaryotic Genome Annotation Pipeline
Scripts and pipeine for Genome_assembly_annotation
De novo genome assembly of subset of the durian fruit genome.
Add a description, image, and links to the genome-annotation topic page so that developers can more easily learn about it.
To associate your repository with the genome-annotation topic, visit your repo's landing page and select "manage topics."