Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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Updated
Jun 5, 2024 - Python
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
Toolbox for Studying Bacteria, Archaea, and Complex Taxons
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
non-redundant, compressed, journalled, file-based storage for biological sequences
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
De novo genome assembly and multisample variant calling
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Earl Grey: A fully automated TE curation and annotation pipeline
provides common tools and lookup tables used primarily by the hgvs and uta packages
Randomly subsample sequencing reads
Scripts and procedures for detecting positively selected genes and codons in primates
Bioinformatics on GCP, AWS or Azure
Long-reads Gap-free Chromosome-scale Assembler
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
A collaborative notebook for genes and genomes
Using combined evidence from replicates to evaluate ChIP-seq peaks
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
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