Same species annotation lift over pipeline.
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Updated
Jul 21, 2023 - Ruby
Same species annotation lift over pipeline.
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
Genome Annotation for the Masses
GeneValidator: Identify problems with predicted genes
Python3 wrapper for parallelized gene prediction using Prodigal
Scalable high-throughput short-read open reading frame prediction
Cpp Programs for feature extraction
Nextflow pipeline for genome annotation of protein-coding genes
iPat allows you to perform GWAS and GS with drags and clicks!
Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples
ncRNA identification, annotation and functional prediction
Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS
Prediction of metastasis sites for breast cancer cells
This project deals with predicting the location of a gene in the human genome based off experimental data
Prediction of genes in genomes with ambiguous stop codons
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.
scripts associated with yam genome assembly
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