Prediction of genes in genomes with ambiguous stop codons
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Updated
Sep 28, 2022 - Java
Prediction of genes in genomes with ambiguous stop codons
This project deals with predicting the location of a gene in the human genome based off experimental data
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.
scripts associated with yam genome assembly
automatically create GLIMMER training materials from GenBank records
Gene Prediction Meta Server is a project that aims to bring multiple offline gene prediction tools online and integrating them into a single online platform in a user-friendly way. The related video link is attached.
Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.
Pogigwasc gene prediction of Loxodes magnus genome
Practical and home works in the discipline Bioinformatics.
A toolkit for identifying gene homologs in closely related species.
PredGenesGetPepts is an easy-to-use, beginner-friendly pipeline to call genes from fasta files, retrieve peptides and blasting them against a given protein database
Pipelines for gene and TE annotation of pangenomes.
Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
ncRNA identification, annotation and functional prediction
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