Scripts to download genomes from the NCBI FTP servers
-
Updated
Jul 28, 2023 - Python
Scripts to download genomes from the NCBI FTP servers
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
A Go package for engineering organisms.
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
A genome visualization python package for comparative genomics
Nextstrain build for mpox virus
VAPiD: Viral Annotation and Identification Pipeline
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
LAVA: Longitudinal Analysis of Viral Alleles
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data mana…
Add a description, image, and links to the genbank topic page so that developers can more easily learn about it.
To associate your repository with the genbank topic, visit your repo's landing page and select "manage topics."