Official AFNI source and documentation
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Updated
May 18, 2024 - C
Official AFNI source and documentation
SPM (Statistical Parametric Mapping) - Development Version
A list of links and pages for early career neuroscientists covering neuroimaging, programming and research skills
Leading Eigenvector Dynamics Analysis Matlab Toolbox
Code used to create the Neural Encoding Datasets (NED), and utility functions to generate neural responses to arbitrary images using NED's trained models.
Machine learning for NeuroImaging in Python
A pipeline to generate subject-specific headcases for fMRI scanning
Example Python, Matlab, and Jupyter notebook code using HED (Hierarchical Event Descriptors). Includes BIDS-compatible test datasets.
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
SPM Documentation
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
fMRI data analysis of long-covid patients
Forschungszentrum Jülich Neuroimaging Feature Extractor
Still a work in progress.
A website version of my PhD dissertation.
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
Explain a black-box module in natural language.
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