Comparing latent space representations using autoencoders and vision transformers using fMRI data.
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Updated
May 31, 2024 - Python
Comparing latent space representations using autoencoders and vision transformers using fMRI data.
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
This repo is provided pipeline for preprocessing fmri & dti data to functional and structural connectivity matrices
Scripts used in the "Dynamic Functional Connectivity in Autism Spectrum Disorder" project.
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm
This repository contains batch scripts to standardise and automate the processing of single echo (SE-fMRI), multi-echo (ME-fMRI) fMRI and VBM data in SPM12.
This repository contains the files that generate Andy's Brain Book on ReadTheDocs.
This repository is associated with the manuscript: “Graph Ricci Curvatures Reveal Atypical Functional Connectivity in Autism Spectrum Disorder”
Code to analyze audio-visual-tactile high-resolution 7T data
This GitHub repository contains code and data for a assignment investigating the brain's auditory networks using functional Magnetic Resonance Imaging (fMRI).
Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).
Code for importing/preprocessing/analysing wavepain MRI and behavioural data. And plotting routines.
This repository contains some codes for the computational neuroscience.
“Plasma p-Tau181 and GFAP track 7T MR-based changes in Alzheimer’s disease”, Göschel L, 2023
This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.
Scripts in bash and python to manipulate dicom images
shell script package for (pre)processing fmri data
A generally applicable whole-brain preprocessing toolbox for mice and rats
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