Using Arduino and TSL250R-LF sensor to identify/compare fluorescence levels emitted from a green light triggered protein sample.
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Updated
Nov 24, 2015 - Arduino
Using Arduino and TSL250R-LF sensor to identify/compare fluorescence levels emitted from a green light triggered protein sample.
PyFDAP is a Python-based analysis framework for Fluorescence Decay After Photoconversion (FDAP) experiments.
Iterative H-minima Based Marker-Controlled Watershed for Cell Nucleus Segmentation
ImageJ macros that automate the workflow of thresholding and analyzing the size and intensity of objects/regions in microscope images.
A backup of my evolving R scripts i write to process my research data. Data processing, thus far include climate data, thermal image and spectral data analysis. Please exercise caution while using these scripts and remember to adapt the code for your purpose or data.
Data analysis for Ingargiola et al. PLOS ONE (2017) doi:10.1101/085027
Quantitation of migration of fluorescent spots into regions of interest.
mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories
ABC-Laboratory is a prototypical simulation software calculating the fluorescence or absorption of different 'biomolecules'. It uses the Godot Game Engive (v.3) and is the result of my Bachelor Hands-on / internship.
This software is used to analyze protein thermal and chemical stability data monitored by CD or fluorescence spectroscopy.
An ImageJ plugin for DEFCoN, the fluorescence spot counter based on fully convolutional neural networks.
My master thesis on fluorescence in bidirectional rendering
fluorescent Ultrasound Modulated Optical Tomography simulation in 2D
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
Super-resolution fluorescence microscopy by stepwise optical saturation
A web tool for the analysis of Fluorescence Recovery After Photobleaching (FRAP) data.
Contains MATLAB scripts used by members of the Glass Lab at UC Berkeley to analyze flow cytometry data.
R and RR course material for the YRLS 2017 meeting
Consistent with up to date protocols and NASA's SEABASS submission standards, hs6PROCESS_SEABASS processes raw backscattering data as sampled in natural water bodies using HOBI Labs Hydroscat-6 (hs6). hs6PROCESS_SEABASS should also be compatible with Hydroscat-4 and 2.
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