Fast demultiplexing of Illumina FASTQ files using Python.
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Updated
Jun 12, 2017 - Python
Fast demultiplexing of Illumina FASTQ files using Python.
ALAPY COMPRESSOR: FASTQ lossless compressor
FLiCK - Format LeveragIng Compression frameworK
Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.
Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).
downsample fasta/fastq files to given number of base pairs
Parallel Windowed Adaptive Trimming for fastq files using quality
Super ultra-fast fastq preprocessor, using parallel windowed adaptive trimming.
An efficient FASTQ manipulation suite
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
simple and convenient program to convert fasta sequences to fastq sequences
a shiny frontend for the nextflow-fastp pipeline
Fast k-mer based tool for multi locus sequence typing (MLST)
Calculate fastq reads and sequencing coverage
Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts
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