Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).
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Updated
Dec 13, 2018
Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).
Data Analysis for Genomics, FASTQ File Structure and Analysis using Python.
A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
A tool to index and extract data from gzipped FASTQ files
It splits a fastq file containing R1 and R2 reads.
Tools to analyze fasta or fastaq files with python.
Download fastqs or supplementary files from GEO and upload to hca-util bucket
fastq file compression program
Build Docker container for FASTX Toolkit and (optionally) convert to Apptainer/Singularity.
Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.
Fast demultiplexing of Illumina FASTQ files using Python.
Pipeline to assemble paired-end sequencing reads, annotate the resulting contigs, compare the genome content across sequences and determine the variants (SNPs).
Parallel Windowed Adaptive Trimming for fastq files using quality
a pacbiohifi read check for the quick view of the read types.
This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.
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