fastq-files
Here are 71 public repositories matching this topic...
Data Analysis for Genomics, FASTQ File Structure and Analysis using Python.
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Aug 26, 2023 - Python
downsample fasta/fastq files to given number of base pairs
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Aug 21, 2019 - Python
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Oct 20, 2022 - Jupyter Notebook
QIIME2 worklflow. From raw data to a feature table.
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Feb 18, 2022
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Oct 26, 2018 - Python
A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
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Jan 23, 2021 - Python
It splits a fastq file containing R1 and R2 reads.
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Jan 15, 2021 - C
Tools to analyze fasta or fastaq files with python.
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Nov 24, 2022 - Python
Download fastqs or supplementary files from GEO and upload to hca-util bucket
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Mar 26, 2024 - Shell
A sorting method for encoding metagenomic data
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Nov 7, 2023 - Shell
fastq file compression program
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May 16, 2024 - Go
Super ultra-fast fastq preprocessor, using parallel windowed adaptive trimming.
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Oct 28, 2019 - C++
work with the time stamps of Oxford Nanopore (ONT) fastq files
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Dec 14, 2022 - Rust
Build Docker container for FASTX Toolkit and (optionally) convert to Apptainer/Singularity.
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Mar 3, 2023 - Dockerfile
Obtain k-mer counts from fastx files
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Feb 29, 2024 - Rust
OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.
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May 10, 2024 - Python
Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.
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May 1, 2024 - Python
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